NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000431

Scaffold Ga0307507_10000431


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000431 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87555
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (47.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002555Metagenome548Y
F004318Metagenome / Metatranscriptome443Y
F020829Metagenome221Y
F038017Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000043114F002555AGTAGMLEIFKDKDKEKGDSVIDALSTILQLLGEELEEAS
Ga0307507_1000043116F038017GAGVVRSTRYRFKLKDKDKPRVNPKHAAYYTLLWIAYVDNMCNMYRALKDKNQKYLVRIY
Ga0307507_1000043117F004318AGTAGMSKVLSSLRLSLVSYIVSYLVLVLVLGIELVLDLGLGSLSILFIIEY
Ga0307507_100004313F020829AGGAMPLVSSKLITNIIFSIYRTPLTLGLYTLIIYTSPLYIWIIITVVSRLTACYNHKDRLIALLIIKHTRIATIGLYRS
Ga0307507_100004315F000630GGAGMGVKGIEAILGKRNLSRSIVNTIGGKYLRALRRPNKGRKYNSNTLKNRNNRIKRLALLGRCPSR
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Institute for Fundamental Biomedical Research
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