NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000700

Scaffold Ga0307507_10000700


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000700 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73516
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004318Metagenome / Metatranscriptome443Y
F006298Metagenome376Y
F009949Metagenome310Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000070010F004318N/AVLSKLRLSLVSYIASYLGLGLVLGIELVLDLGLGSLSILFIIEY
Ga0307507_1000070016F006298N/AMERRLVIKNSDGLYTIYLTILSEVLVRRVVLNFYIYKELFGFINLTLKIFYAFILNQEALEVGRSNLTISNISYTLTKLIICLLSLIKGVSS
Ga0307507_100007003F056201N/AMAPSRSIRLRRLNTLTRKIPYGRMPKWIIVVEVPREHLSMAYREKEIN
Ga0307507_100007009F009949AGGMGGKYLRALRGPNKGGKYNGNTLKDRNNRTKRLALLGRCPSR
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