NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000748

Scaffold Ga0307507_10000748


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000748 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71714
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (44.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F004318Metagenome / Metatranscriptome443Y
F064278Metagenome128Y
F074608Metagenome119Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000074812F064278N/AMPLANTYYNTLINPAMVMCFNYGKDSYFTTSCLELKDIGNIKEIEGEETFNKLEKKNP
Ga0307507_1000074814F096350N/AMVGLVYFFSAKAFLISAIITVKIIYSGFLASYTSGVAPII
Ga0307507_1000074815F004318N/AVLSKLKLFLVSYVVSCLGLGLVLGTKLVLDLGLGSLSVLFIVEY
Ga0307507_1000074818F002220N/AMESLFRERIHLLKSNSVIKLSLSFNFTIRFAFTSLSSLRAKNWSSPKIIILLVYILMIPNRVPVVVIRKQELNIKVVIKGFSL
Ga0307507_1000074820F074608N/AMERRLVIKNSNGLCTIYLIKLSKVLVGRVVLNFYIYKELFSLINLTFKIFYAFILN

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