NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000756

Scaffold Ga0307507_10000756


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000756 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71443
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F004318Metagenome / Metatranscriptome443Y
F005943Metagenome385Y
F054477Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000075619F000630GAGGMGVKGIEANLGKRNLSYSIVNTIGGKYLRALKSPNKGRKYNSNTFKNRNNRTKRLALLGKYPSR
Ga0307507_1000075620F004318N/AMVSYLVLGLVLGMELVSGLGLGSLSILFIVEYQFF
Ga0307507_1000075621F005943GAGVVKRHNVMLWDEGSGYKTYVFKESTRYCVIDRKGRGRKEVIYLRVADVSCTQGVRESTGLFYGGLCGGVP
Ga0307507_1000075622F054477N/AVFTSLRVKARANKLNSPGINWRYRLSVGIRLFFRFNIVASKEYYLTIIGSLEV
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