NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000809

Scaffold Ga0307507_10000809


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000809 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69217
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F002220Metagenome581Y
F004318Metagenome / Metatranscriptome443Y
F009949Metagenome310Y
F014479Metagenome / Metatranscriptome262Y
F050242Metagenome145Y
F078050Metagenome / Metatranscriptome116Y
F094694Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100008091F094694AGTAGGVVSILKVGLVYIVYKVLSEYIHLLTLTYIVVVINFIGKSKYQLFYL
Ga0307507_1000080910F000247N/AMHVALNYKRTPRIEVAHTSCLASSLNTFAGKTLVSNSNVLFARPFVDGKLYYNGGLSLNRSIDPTSTGL
Ga0307507_1000080911F014479N/AVGPEGFQLLSSSITTVIEGIYIFLSGNHRCARVFELLAHLGVRAYSAVLPKGLYYRNLSLLKGPSYLNATAFYKVSVEFPFRLSRDFLREDSRYK
Ga0307507_1000080914F009949AGGMVNTIGGKYPRALRRPNKGRKYNSNTPKNRNNRTKRLALQGRYSSR
Ga0307507_1000080917F002220AGGMHLLKSNSIVKLSFFFSFAIRFAFTSLSSLRVKNWLSPKIIILLVYMLIILNRVPVVVIK
Ga0307507_100008094F004318N/AMYRVLGKLLLSMVSYMVSYLILDLVLGIKSVLGTELVLDLGSGSLSILFIVEYQFF
Ga0307507_100008095F078050N/AMVDIKEWLNEEKQLEDLREKVRARRKDLDDIIVQLTH
Ga0307507_100008098F050242GGAMRLYIPTSAAKDIGHLSLSSREVVCINFKLILQLKLLIIKYRVSSVYKQ
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