NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000925

Scaffold Ga0307507_10000925


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000925 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65406
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F004318Metagenome / Metatranscriptome443Y
F032886Metagenome178Y
F038017Metagenome166Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000092513F000630N/AMLERYIGVKGIEANLGKRNLSYSMVSAIGGKYLRALRRPNKGRKYNGNTLKNRNNRTKRLDLLGRYSSR
Ga0307507_1000092514F004318N/AVLSELKLSLVSYIVSYLSLGLGIELVLDLGLGSLSIFFIVEYQFF
Ga0307507_100009252F038017GAGVVRLTRYRFKLKDKDKLRVNPKHIAYYTLSWIAYMDNIYNIYRAPKDKNQKYLIRIY
Ga0307507_100009255F000630GAGMGVKGIEANLGKRNLSYSIVNAIGGKYLRALRRPNKGRKYNSNTLKNRNNRTKRLALLGRCSSK
Ga0307507_100009256F032886N/AMELEYLLINSNKDKKEANWGYLNLNNAIEVETKTTTERGSVTGIIILLDTASIAL
Ga0307507_100009257F056201N/AMAPNKSIELKGPNTLTRKIPYGRIPRGITVMELSREHLSMAYKGKEIN

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