NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10001127

Scaffold Ga0307507_10001127


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10001127 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59226
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000746Metagenome908Y
F004318Metagenome / Metatranscriptome443Y
F006298Metagenome376Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000112710F006298N/AMERRLVIKNSDSLCAIYLTILSEVLVRRVVLNFYIYKELFSLINLTLKVFYAFILNQEALEVGCSNPTISNVFCTLTELIICLLLLIKGVSS
Ga0307507_1000112719F004318N/AVLSELGLSLVSYMVSYLGLSLVLGMELVLDLGSGSLSILFIVEY
Ga0307507_100011272F000746N/AMITTGLIEYIVAVVGNTAEGIINNYKAKVEVLIEVYFKVITRRSATFIRN
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