Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10001620 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49813
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (50.00%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

49813

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (50.00%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F002793	Metagenome	529	Y
F003725	Metagenome	471	Y
F004663	Metagenome	428	Y
F006298	Metagenome	376	Y
F014479	Metagenome / Metatranscriptome	262	Y
F032886	Metagenome	178	Y
F071034	Metagenome	122	Y
F102221	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000162010	F004663	AGG	LEESRLGNINKERSLKKELPKGDLRGAITKLLGVISLTGGEPILLLPSLDKPC
Ga0307507_1000162011	F002793	N/A	MDIIPLVDNLEMLGIFKDKDKEEGDGVTDALSIML
Ga0307507_1000162012	F014479	N/A	VGLGGFRLLSSSIITVVEGVCVFLSVAGNRRYVKVFELLVHLGIRARLAILPRGLYCRNLLLLEGPSCLSATAVHEVFIEFLFRSSRDFKGG
Ga0307507_1000162016	F071034	N/A	VHCVVGETSRYFTTLVAVPAIKISFYLRISYLCSSFSIVKTIEPNLVSRLCLFILDKIHLGNPYIFIGLKVLISSFKSLAPSSPRKGRVGTL
Ga0307507_1000162018	F002220	AGG	MHLLKSNNIIKLSFFFGFTIRFAFTSLSSLRAKNWSSPKIIILLVYIPTIPNRVPIVVIKKQGLNIKVVIKSFSL
Ga0307507_1000162020	F006298	N/A	MERRLVIKNSDSLYTIYLTILSEVLVRGVVLNFHIYKELFGLINLTLKVFYAFILNQEALEVGHNNLTISNISCTLAKLIIYPLLLIKRVLS
Ga0307507_1000162023	F000630	GGAG	MGVKGIEVDLGKGNPSRSIGNAMGGKYLRALRGPNKGRKYNGNTFKDRNNRTKRLALLGGYSSG
Ga0307507_100016203	F000247	N/A	MHVVLSYKYTPRTEVARTNCLTGSLNIFADITPVPSSGVPFTHLSTGRKPYYNGGLSLNESIDLTSTGL
Ga0307507_100016204	F102221	AGTAG	VLKVVSPLFKTVDYSKQFLIVGIIPDFRSLEFSAIEYYRSLVELGSVQMPIRLQ
Ga0307507_100016206	F032886	AGCAG	MELEYLLINSNKDEKEANWEHLNLNDATEAETKTTTKRGSVTDIATPLDMISIAL
Ga0307507_100016209	F003725	GGAG	MNLYTDLKETAKLVQERMKRYYNAKRSKGPDLKEGDKVWLLYKNFKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10001620

Overview

Ecosystem & Geography

Associated Families

Sequences