NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10003637

Scaffold Ga0307507_10003637


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10003637 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29279
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004318Metagenome / Metatranscriptome443Y
F004663Metagenome428Y
F020829Metagenome221Y
F032535Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100036371F004318N/AVLSELKLSLVSYIVSYLGLGLVLGIELVLDLGLGSLSILFIVEYQFF
Ga0307507_100036374F020829AGGAMPLVSNKLITNIMFFICGTPLTLRLYTLIIYTGPLYIWIIITAISRLTAYYNYKDRLTALLIIKHIYIAAFGLYRSWNPWGQYINYI
Ga0307507_100036376F004663AGGLEESRLNSIDKEGSLKNKSPKGDLKGAIAKLLRVVSLIEEKLILLLPSLDKPC
Ga0307507_100036379F032535N/AMAYKLIGATATRWYKILSYIGPNTITQLPKHIISVKLTEFETNKRALLKIKCEVYLLVKH
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