NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318519_10481634

Scaffold Ga0318519_10481634


Overview

Basic Information
Taxon OID3300033290 Open in IMG/M
Scaffold IDGa0318519_10481634 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)746
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021226Metagenome219Y
F069281Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0318519_104816341F069281N/AQREGRAAQAQAQTEITMMLVFVIITLAMLVLLFADQSFSKATIELMCLF
Ga0318519_104816343F021226N/ASILEFMGAVLLPVCEGEIWRVRIIWPNGAVHHFGKFAFEKDAVDWIAAHSRLTMPGEKSSPPIAPSE

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