NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10036448

Scaffold Ga0326728_10036448


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10036448 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7934
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001548Metagenome / Metatranscriptome673Y
F007764Metagenome / Metatranscriptome345Y
F052099Metagenome / Metatranscriptome143Y
F062072Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1003644810F007764N/AMPVTVEMHNTADAESRRDVIAMIEHILSDRPGDWRVVILGSQANDCWEMKVTGPNAFERSYALEGTLGQHEPSTVAAIIARMLPSRG
Ga0326728_100364485F062072AGGAGMSEAKPFGEGRGESRRSTRVPLNVSIKAQGITEPLICEGETIVVNLHGALISTSVALSAGMKIEIDVYLTGKHANAEVVYVDPEKPLQWGIALAIPRNIWGISLPPEDWHEDGPE
Ga0326728_100364486F052099GAGGMPSVAPAARVAFVLEAISGLQKLQREMARLPQQDEDYESKKRALQAAIQELRKMISANAQ
Ga0326728_100364487F001548GAGGMFSVRVILWTVAMAYTGFLLTGQGLRTFNSLSITEAFVGALTGFFLAIMFTLRERRRQRPALVAYSVAQVFPNWGMSREHRGSRPKLKR
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