NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10155983

Scaffold Ga0326728_10155983


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10155983 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2454
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F010071Metagenome / Metatranscriptome308Y
F039911Metagenome / Metatranscriptome162Y
F101012Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_101559831F101012N/AKPRESALRWINSHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNTLMVTFVVPIWCRLSRLESRL
Ga0326728_101559833F039911AGGAGMKYTIATVFVVVATLAGYFGIRRLAHKDLGFTRVKRYASKLANTLIHTEATAAQEAGVSPAA
Ga0326728_101559834F005112AGGAGMSLVAKYKLFWAACIAALCSLAFWKNSKSYPRKSRLWRLGKSAVDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMDRRNRKEVPRAA
Ga0326728_101559835F010071GAGGMNCLANLALSVGETLVHEGRRLLFGIALGAAKQFLGTPQPAGTRDLAFTRALQKKAVDGALLAGPRTGKEYAKFALKKGLPTDQRPRSLAVENEPHSVDDFNGVIKEGYGKGEKRLVYSGTGVIKVDGSCQLGKINVHEHDAEKAGFHYDFVAEGVDPHTHSFEVN
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