NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10679619

Scaffold Ga0326728_10679619


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10679619 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)779
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007120Metagenome357Y
F076760Metagenome117Y
F101012Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_106796191F101012N/AKKSNPRQAVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMVMFIVPIWSRLSKLEDR
Ga0326728_106796192F007120AGGAGGVKTLIITLSAACAVIAGYFSVRYFTGQDLGFTPAKKYGRNLVKSLLHTEITAAREAGATPASTTEQAASL
Ga0326728_106796193F076760AGGAGMSLVIRYPLFWAALMGALLGLAFWKNSQSYPHKPRLWILGKAVIETGLVVLMVIYAPALLLMYVVIWLISPFRNKIIQVTPA
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