Scaffold Ga0316612_1001345

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316612_1001345

Scaffold Ga0316612_1001345

Overview

Basic Information
Taxon OID	3300033494 Open in IMG/M
Scaffold ID	Ga0316612_1001345 Open in IMG/M
Source Dataset Name	Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6642
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	45.1993	Long. (^o)	-83.3279	Alt. (m)		Depth (m)	185
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087946	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316612_10013455	F087946	N/A	MLSKQRIPDLIVILVLGLFLTLLNYTGTIGVVSDYPFIFMLIMYFVGRAVTWYVINKHFEEDEGE

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