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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033978 Open in IMG/M |
| Scaffold ID | Ga0334977_0000608 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21474 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (49.15%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000345 | Metagenome / Metatranscriptome | 1253 | Y |
| F000744 | Metagenome / Metatranscriptome | 909 | Y |
| F002243 | Metagenome / Metatranscriptome | 578 | Y |
| F003331 | Metagenome / Metatranscriptome | 493 | Y |
| F004314 | Metagenome / Metatranscriptome | 444 | Y |
| F004546 | Metagenome / Metatranscriptome | 433 | Y |
| F004898 | Metagenome / Metatranscriptome | 419 | Y |
| F007569 | Metagenome / Metatranscriptome | 348 | Y |
| F013172 | Metagenome / Metatranscriptome | 273 | Y |
| F027765 | Metagenome / Metatranscriptome | 193 | Y |
| F032934 | Metagenome / Metatranscriptome | 178 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334977_0000608_11240_11365 | F004898 | GAGG | MDLSELIDELREIAMYESDPQDWMGYLENDDYWVPDSELAY |
| Ga0334977_0000608_13978_14151 | F032934 | N/A | MMIMTTHTKPIFIKQFANRWYLVWTDTNRTIASFATEFEAYAARKYMIEYNKNGGIK |
| Ga0334977_0000608_14172_14306 | F013172 | GGA | MNDATNRRIDKLMGEGVKIDTATHEGRKTIGYNYLELALDESEE |
| Ga0334977_0000608_14683_14892 | F000744 | GGA | MTMIEANVQLNVHEIGVILSALQELNLREENRIAREYGSVPALYNKLYTVFEQMDTSGTVLRNDVVPSF |
| Ga0334977_0000608_14925_15188 | F002243 | GGAG | MTTFPTLQSKDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC |
| Ga0334977_0000608_15483_15665 | F027765 | GAG | MNDEDITQFLKAFSDFMKHSEEQIDSFQKWEEAKNYTDLFYEQKAAELEITVDYYIQEFV |
| Ga0334977_0000608_18603_18755 | F004314 | N/A | MYDDYDLDYTYASDYSYDLEEYYALDARELDEDYARDGQDYEGLAYRHYA |
| Ga0334977_0000608_531_716 | F003331 | N/A | MTEKDKIFYNVWCCAYRRRYAAKLKQDWELYNREHQTLLMCLKIAKWTTFDTEKLKPSGI |
| Ga0334977_0000608_5521_5682 | F007569 | GGAG | MNFTPEQYKLIFTAVRRYQFEKTILDSKEYHECGEILDELFDSVYTQRAEQPT |
| Ga0334977_0000608_5682_5855 | F004546 | GAG | MDYTEEFPFDQFPWKLVYKDGNETRKCYFQSEDHRKKHIERYKLKKKDIKLSYKFEE |
| Ga0334977_0000608_9163_9510 | F000345 | N/A | MTEKKNSWQEWWDSDACKQLQKANEEAKQRAVGKYFMLSEEDKLDMVQAICYIMCKAEEQGTSHRGLQDTLGIYPTGFWVDHLMDIHNALWSYYHDQKKEKELRDDLDNLDNFIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |