NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0026660

Scaffold Ga0334989_0026660


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0026660 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3091
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050782Metagenome / Metatranscriptome145Y
F079623Metagenome115Y
F096670Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0026660_1702_1821F050782N/AMGYAGFADIFKAKMMKLMEALDYVREYIDDLLVITRGTL
Ga0334989_0026660_2760_3089F079623N/ASSSTGRPVDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENTETGKVTAVVTMLKVFGDEINNSRNTNPKKLLNKPNKWLNLKKKALNRPNKHLKRLRRSI
Ga0334989_0026660_686_1129F096670GAGMLWGQRINVYTDHKNLTRDGLGLTSDRVARWQILLEQYVPEIIYIKGIHNTVTDAISRLDYDPKLNTTNEYNHAMHVMSTKVESNQKQWMMFSKFWSCFSETQDPDESNTIKLNHVFANRSKEDEIFPLTVKEIEVAQCRSDSHILL
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