Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0000229 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0000229 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48211
Total Scaffold Genes	92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	69 (75.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

48211

Total Scaffold Genes

92 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

69 (75.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F020166	Metagenome / Metatranscriptome	225	Y
F023851	Metagenome / Metatranscriptome	208	Y
F060917	Metagenome / Metatranscriptome	132	Y
F091936	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000229_18857_19396	F000369	AGGA	MTNDIEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEFIDEWKGVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEVLVGILKEVTASCPKCKLEVAKRLSQITGIVEAVVIEEADVV
Ga0334992_0000229_30127_30270	F014140	N/A	MNKYRIKLDVEVEVEAFNPEDASEYIHDIFNIDDEIKKVNIIKITSK
Ga0334992_0000229_30947_31264	F011394	GGA	VTFIDKDKDHFKYGINQWTGEPNKPTFYNKEMALKIRELKKPTADLKIDIVKYPDFLAIRLYEDNFGKYDGSLKMRVIDYVEMVKKILESYGVRVELEGKPGNGK
Ga0334992_0000229_31817_31966	F023851	N/A	MCEACFDGKLEPRWVVILAGRQNGSEYVKDHVSKKRYPGNEILASELLI
Ga0334992_0000229_46032_46142	F020166	N/A	MREPRIMKMDWRSLGYWPVYKDGKLTWEKDPDVQDE
Ga0334992_0000229_46135_46278	F091936	N/A	MSDGLDRSMRLKLVIEDMLKDIDMSGEEWNDRDKDGVAYWEKWNKND
Ga0334992_0000229_46271_46540	F060917	GGA	MIDWLVHKLFWWAPLRKAIIEEVHMYDHLSDVFTNSDLTDIASCSWMEGDTWYGWTYNSNAKRYYFDDIGNKSLIGLWEDHWLKEADSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0000229

Overview

Ecosystem & Geography

Associated Families

Sequences