NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334994_0006624

Scaffold Ga0334994_0006624


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0006624 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8113
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039944Metagenome162Y
F046179Metagenome151Y
F056323Metagenome137Y
F072111Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0006624_1108_1302F072111AGGCGGMKKQMILAAAIFGHLFLFLFVDSLFESPTRWKMWAFYGSSLLSVAVWAAYVIHEDDNNPKGGAA
Ga0334994_0006624_1552_1863F046179AGGGGGMMPQWETQALALITGAGVSTDDAPWVLECIQKAAEDIAGMDEADQFPLFMEYHGNDKAALCNIDAETFADVLACLGVDLHRLETLWERKHLDPPTDDVDWSME
Ga0334994_0006624_3324_3464F039944AGGAGMIRNLFLSLALLALLGLAIAITSGTFGGPSDIETRLRSSEPLSLEP
Ga0334994_0006624_537_758F056323N/AMIRLFSLHEMADDLKLPPAVVALWATDGYIPYVMKDGLPLFDPVAVGTHIAKQLNELNRIDDGNDKTTTTGAD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.