NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000903

Scaffold Ga0334996_0000903


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000903 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19481
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (79.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016801Metagenome / Metatranscriptome244Y
F027847Metagenome / Metatranscriptome193Y
F054848Metagenome / Metatranscriptome139Y
F087184Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000903_12105_12437F087184AGGAMDIDVIIASINAGVYDSSLTKLKEAIEDRLTASRSERTINDYHIGDAVVFNSLTGTRYMVGQKATVVTKKQKKVVVKLDNPTGRFARVNPITREVESALVTVPVAIIDLV
Ga0334996_0000903_12589_13071F016801AGGTGGMDLATHKIVQNNGALIAVSGASRGGNIAQFGWKAPKPTRTEDLDIFMTKKFIPSLRKAFQDAGYEGKDDGAAAEHDSNLIVSVQGVIYPIFGDYSWDREARNVYYSGSGGDIALGALEALSYRKAKTPEAAEKILRRAIEIAIQHDIYSGGEIHTFVQEE
Ga0334996_0000903_16181_16303F027847AGGMTNPFTAVIDWIDDNADFGAPIGAFIGVGIAITLCFIFGA
Ga0334996_0000903_17233_17436F054848N/AMKRGTTMSTETATPTKAAELYTAGKSVVEVASELGVTYGKARKLIAEAGADIRNTSDRLKGKTRKAK
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