 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034013 Open in IMG/M |
| Scaffold ID | Ga0334991_0000390 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 43050 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 75 (82.42%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000868 | Metagenome / Metatranscriptome | 853 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F021109 | Metagenome | 220 | Y |
| F021288 | Metagenome / Metatranscriptome | 219 | Y |
| F030758 | Metagenome / Metatranscriptome | 184 | Y |
| F043932 | Metagenome / Metatranscriptome | 155 | Y |
| F060917 | Metagenome / Metatranscriptome | 132 | Y |
| F063705 | Metagenome / Metatranscriptome | 129 | Y |
| F068831 | Metagenome / Metatranscriptome | 124 | N |
| F105175 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334991_0000390_10321_10488 | F000441 | N/A | MKKKRRTKMKMSDKYLNDQLITAQKLLWGGSETENIEAHNIIAKLIKDKIEQVEL |
| Ga0334991_0000390_11033_11209 | F063705 | GAG | MKLHLISLNQDWEATKNGEPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNNERVY |
| Ga0334991_0000390_11436_11594 | F021288 | AGGAG | MLGYTQKDLADMTYGVYQADLLINPDENPAIHNYLVTAHDFLQGLWAEGYFD |
| Ga0334991_0000390_11594_11824 | F000868 | AGGTGG | MSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQMFADFRFAEMSDNNYLKGRFNLFYDLNPGDQYYLEYDEEK |
| Ga0334991_0000390_13807_14484 | F003422 | GGA | MSVGPGTILFMTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATITPTTTKEEQMETTVSPAVEYNPDLLVTYKIVSNYSDPEYATDKVRNIEWELHNSRTNSKIASVLTNKIASVKDIIVEAYSDSDDQETLRLIAEALEIELTREVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN |
| Ga0334991_0000390_20932_21102 | F021109 | AGG | MNTLNRIKAEQDLARHIAHEKAMAKSPWIRESVQAFRNATPEQLAQVEAIRLKRGM |
| Ga0334991_0000390_2_148 | F105175 | N/A | DGKDLNGFTSPKVNDSTVWGNNEQYAADPKAAFPSTDVSNQAQAQGPK |
| Ga0334991_0000390_31527_31904 | F043932 | AGGA | MAKKFKSLLNLLTLAEDPLSGSTGDVYFNVTSKNIKIYNGAVWVDLTPGTTDPAPFYMHTHSYDGNVHTVNLQETINFSEDINNNAGVLETNPAIIGLDGGTPTSSYANASYTELTLLDGGQIGN |
| Ga0334991_0000390_31894_32445 | F068831 | GGAGG | LATSYPTSKDNLTNPAATESMEGHADLHGNVNDAIEAIENKLGVDGSTDVNSIDYKVSQLQANLSTLDAENASELLGLDGNNDLTIDGIENKTTIDSFSKTVYKTVRYTLQTDKSVGNLTHTSTIVLLNDGTDVHISESDIVSNTDLSLATVTFEENSGIISLCVTPVSGSIKVRYFRTALKA |
| Ga0334991_0000390_34141_34506 | F030758 | GGA | MATVDKNFKVKNGLNVAGTATFGSNVVLGETPLRFDTVTNKLQLQINGAWVPIALNSEIPDTSQDISFMDIGLAIDYNGQPIYTVQANGVTPTGINKFIDGGSPSSTDNDVSMVFDSGAL |
| Ga0334991_0000390_4896_5165 | F060917 | AGGA | MIEWLARRIFSWTSLREYIVDEVHLYDHLDTIINDPEGMKIASSSWMEGDTWYGWNYDSNAKRYYFDDVGNKSLIGLWEDQWLSKADSN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |