NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334946_000175

Scaffold Ga0334946_000175


Overview

Basic Information
Taxon OID3300034026 Open in IMG/M
Scaffold IDGa0334946_000175 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28827
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (65.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F033742Metagenome176Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334946_000175_10688_10933F033742GGAGGMYIYTIQAMPGQKAKFEGDPSVKYRIRRVNDSIAVAKKGRSEIIRENLDYAEALEMVNGFNSMEGKSQVIRDEAARQKNGL
Ga0334946_000175_11701_11943F091480N/AMRDLHVYVEPAGPGARVERKAFYSRRADGPFYRWLYAEGSGRWRYSRVSLDRPTLRVLCVAPWDAVPPALRSRLGEHYLD
Ga0334946_000175_11984_12214F020517AGGLSGQKPVSRDARHYLVKRPHEIIAKRRSWNEVQAELREKDSDADEAMLFRGVVTADGTEYRDMYADSRTQVTEHTA
Ga0334946_000175_12432_12599F081092AGGVSGYDDFIERLEAALGGEEAREDFLDYLGGLTSEGRADILAGADRREAEEEAEVA
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