NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334946_000445

Scaffold Ga0334946_000445


Overview

Basic Information
Taxon OID3300034026 Open in IMG/M
Scaffold IDGa0334946_000445 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8645
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334946_000445_5301_5543F091480AGGMRDLHVYVEPAGAGARGERGAFYTRRADGPYYRWFYAEGSGRWRYSRVSLDRPTLRVLCVAPWDAVPAALRNRLGEHYLE
Ga0334946_000445_5582_5812F020517AGGVNGQRPVSRDAKHYLVKRPNEILPKRRSWNEVQAELREKGTGADEAMLFRGIVTEDGTEYRDMYADSRTGVTEHSA
Ga0334946_000445_6029_6190F081092AGGCGGLNGYDDFIERLEAALAGDEGREDFLVYLEGLTGEGRAEILAGADRLEAETEVA
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Institute for Fundamental Biomedical Research
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