NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0397168

Scaffold Ga0334995_0397168


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0397168 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001834Metagenome / Metatranscriptome628Y
F002687Metagenome / Metatranscriptome536Y
F062578Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0397168_345_731F001834N/AMPSTILSSIRTPLATALAGVAGNVYAFVPESPIPPCVVLVPDSPYLELETINKSTIHTKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPAGYIVSSVERPTVQQVGASTLLIADVRVSTYYTQTA
Ga0334995_0397168_40_345F002687GGALADNLGQYTFSASITNADILEANVIPSGVATLSSASTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFSPTPFRMGRSLFNKCVGLLGSYMDTDSLAQ
Ga0334995_0397168_741_863F062578AGGAGMATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQT
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