Basic Information | |
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Taxon OID | 3300034073 Open in IMG/M |
Scaffold ID | Ga0310130_0003902 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6235 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000473 | Metagenome / Metatranscriptome | 1097 | Y |
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F003582 | Metagenome / Metatranscriptome | 478 | Y |
F011938 | Metagenome / Metatranscriptome | 285 | Y |
F013878 | Metagenome / Metatranscriptome | 267 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310130_0003902_1200_1427 | F013878 | AGG | MLNLTELGVEVLIKRAKNVSPFWDNYDLVIWKKDINGFTNIKGMYRQNAWGTAERFSVTKQGIWKIPTRYVKHFK |
Ga0310130_0003902_181_417 | F000671 | GAGG | MEKILCYSCNKTKNKLDVKKSSLLPINLLMCETCITSKFEPRWVIILAGRSNGAEHVKEYIQKKRYIGNEVSASELLV |
Ga0310130_0003902_2516_2659 | F003582 | N/A | MNTYRVKLEVDAEVQAFSEDDAVDYINDIFGVDDEVKSVKIVNVKEK |
Ga0310130_0003902_417_614 | F011938 | AGGGGG | VKEYYDIIYIVYIHSENCYGTVEKLGAFASLVKYNFAGEDIEEMLENEDFTIVDEIVHQHVEESN |
Ga0310130_0003902_598_918 | F000473 | AGG | MFLNKKDPSDHFKYGINQWTGEPNKPVFYTEEMKKRVHAIPKPAMLLMDVVKYPDFLALRLYEDNFIQFDGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSERVL |
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