NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0003902

Scaffold Ga0310130_0003902


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0003902 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6235
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0003902_1200_1427F013878AGGMLNLTELGVEVLIKRAKNVSPFWDNYDLVIWKKDINGFTNIKGMYRQNAWGTAERFSVTKQGIWKIPTRYVKHFK
Ga0310130_0003902_181_417F000671GAGGMEKILCYSCNKTKNKLDVKKSSLLPINLLMCETCITSKFEPRWVIILAGRSNGAEHVKEYIQKKRYIGNEVSASELLV
Ga0310130_0003902_2516_2659F003582N/AMNTYRVKLEVDAEVQAFSEDDAVDYINDIFGVDDEVKSVKIVNVKEK
Ga0310130_0003902_417_614F011938AGGGGGVKEYYDIIYIVYIHSENCYGTVEKLGAFASLVKYNFAGEDIEEMLENEDFTIVDEIVHQHVEESN
Ga0310130_0003902_598_918F000473AGGMFLNKKDPSDHFKYGINQWTGEPNKPVFYTEEMKKRVHAIPKPAMLLMDVVKYPDFLALRLYEDNFIQFDGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSERVL

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