Scaffold Ga0335027_0016249

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335027_0016249

Scaffold Ga0335027_0016249

Overview

Basic Information
Taxon OID	3300034101 Open in IMG/M
Scaffold ID	Ga0335027_0016249 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6395
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046256	Metagenome	151	Y
F072115	Metagenome	121	Y
F095372	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335027_0016249_2657_2776	F072115	GGAGG	MSALEVLSYLTDTTFTTVVLLTIGTFAALQFINRIGGAQ
Ga0335027_0016249_3867_4043	F095372	N/A	MNIQAIAHTAADFNAAHDYDVAAALKLTELVIRHAHVVQLARKEAADPQLSLPLEVAQ
Ga0335027_0016249_4828_5052	F046256	N/A	MTRHDYFATGTFPWSGLRLAGRRFDSPELFAMMRRQCLSDSCVRHACADLDVLPFAEEIAGIEQHILRREAAYC

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