NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0023016

Scaffold Ga0335027_0023016


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0023016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5265
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0023016_1940_2245F000473GAGMDSSHFKHGINLWTGEPNKPVFYTPEMAKAVRSITKPSNKLMMDIVKYPEFLALRLYEDNFIQFEGLKKEMVIDYVGKVKKLIESYGVRCELEGVPSEKVL
Ga0335027_0023016_2426_2662F000671GAGGMEKVLCYSCGKTKNKLNLKRSTLFPINLLMCETCIASKYEPRWVVILAGRQQGSESVREYILKKRYEGAEISASELFV
Ga0335027_0023016_354_497F003582N/AMNNYKVKLEIDAEVQAFNENDAVDYVNDIFGVDEEIKNIKIVSVKEK
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