NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0029132

Scaffold Ga0335031_0029132


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0029132 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4025
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072277Metagenome121Y
F102814Metagenome101N
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0029132_2331_2693F103142GAGGMALDYKGFKWGERISADQDSVDRFLHEGLVPQSPSVGDLWSAAEWIATYGSENAEEAQGWANVVAFLMLTAEAKEKRSNLAKAKKKFAEANGIPVSQVRIKKEAEIIREGLALIPDKIDN
Ga0335031_0029132_2693_2830F072277AGGAGMMEKCVKCGVAIEKMEVFPKGVCLACYAVEFEKEFQSALKIARFK
Ga0335031_0029132_3010_3531F102814AGGAMAGTKPRDSQKQRLYDAQRLAGFYNTGEVMTIKEAQKFVNQVLSHQKTKKLHEQYRFQFSTYPSKIIVEAGGGNHATMRTRNWELVRLIRLTKAGRNKFIILHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRVRVMTKAKKARVPRKREIVSARLVA
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