NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0008725

Scaffold Ga0335036_0008725


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0008725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8381
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070923Metagenome122Y
F082075Metagenome113Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0008725_3796_4236F070923N/AMPARRVVHACFTCSACGREVTVDDAPAGMLPHLRSRLRAEVGPRAVAAGRAFDEFVDSVARCWNAEHWTKLARAQPESEMAAVRDAKVLIAKVREDVEAMWGDSPELQKLYGDVGTDAVESFARLWFESMANRTWMRAACREARKT
Ga0335036_0008725_4258_4647F102439N/AMGEVQRSLLSDDELPPAKGKKRRMPERLSPQLRKWLTQLARVGARITWTIELLYDPRKGGQGELCERAKSGDHTLVLDTVREVEHRAASLAEDIEVFMTPPDKLPSEPGSKARVEAMARRQLAKLHLFD
Ga0335036_0008725_5074_5286F082075N/AMPHAILRFRLPDEQSEFDAAMQGADAKSAIWQVDQYCRGVLKHGEPSAETRRHLEEIRDMLRERPGLLDD
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