NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335066_0055649

Scaffold Ga0335066_0055649


Overview

Basic Information
Taxon OID3300034112 Open in IMG/M
Scaffold IDGa0335066_0055649 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2622
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F040616Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0335066_0055649_1030_1386F006181N/AMKRNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGMECEMLINSKKRSLSVNDIVCVNGTYFQCASFGWHEVTPAYVNELEEAVAAHPSRVEGAWFALMDVMWERHNIVVA
Ga0335066_0055649_156_290F040616N/AMIDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYYNE

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