NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334963_000317

Scaffold Ga0334963_000317


Overview

Basic Information
Taxon OID3300034145 Open in IMG/M
Scaffold IDGa0334963_000317 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 59SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20352
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334963_000317_10274_10498F079676GGAGMPGETADPGARIKAGDLVRALDGAYKGSVGTALRVVTSRDEGRTSQSTILVSFPAGGADYLDAGALEKAETADD
Ga0334963_000317_9186_9428F091480AGGMRDLHVYVEPVGSAPRGEWKAFYSRRADGPYYRWLYAEGQDHWHYSRVSLDRPTLRMLCVAPWDAVPATLRSRLGEHYLE
Ga0334963_000317_9914_10075F081092AGGCGGLSGYDDFIERLEAALADDEGREDFLNYMEGLTSEGRAEILAEADRREGEAEVT
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