NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0008685

Scaffold Ga0335017_0008685


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0008685 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5574
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075711Metagenome / Metatranscriptome118Y
F079623Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0008685_4161_4412F079623AGTAGLEQPSGIHLESTDTRPIKATKLALDNIRANEIAIENSKTGKVTDVVAILKVFGDKFGNSRNANPKKLLNKPNKRLNPKKKHLK
Ga0335017_0008685_4565_5020F075711N/AMKRAVPQLWGTSNGTFKTNKVGDITLSFVEYSLSKSVHLTPNIVEYEAGATAPMYDLIIGKQTLHDIGAVLDFKEKTITIGSILLPMRNIVNLQLKPSLTRALRHNTCQAQEPVSTRNATKRVIEILDAKYDKANLPAIVNDNCHHLTPLQ
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