NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370495_0025657

Scaffold Ga0370495_0025657


Overview

Basic Information
Taxon OID3300034257 Open in IMG/M
Scaffold IDGa0370495_0025657 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1758
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.835Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019097Metagenome / Metatranscriptome231Y
F034330Metagenome / Metatranscriptome175Y
F035656Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0370495_0025657_1405_1593F035656N/AMFAPAGNGEVRIKTEDGLHALLWGASIPAERIEEAVAALRHDTEHEIPNVTLTLERLSKLGL
Ga0370495_0025657_473_619F019097N/AMDFLQLAFMLGPLLGAAAGYLVDGGTGATSGFVIPMGPLVVAWLFGGR
Ga0370495_0025657_748_888F034330AGGTGGMRAVETLTLVLVATVLFMWVVLAHPTPDEQARVYDSMGQSTGIAWR
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