Scaffold Ga0372943_0277517

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0372943_0277517

Scaffold Ga0372943_0277517

Overview

Basic Information
Taxon OID	3300034268 Open in IMG/M
Scaffold ID	Ga0372943_0277517 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1059
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Eldorado National Forest, California, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.7833	Long. (^o)	-120.2976	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007832	Metagenome / Metatranscriptome	344	Y
F050351	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0372943_0277517_173_286	F050351	GAG	MSELPLASLSGADLFGLVVSALVCVYLVYALLRGENL
Ga0372943_0277517_51_176	F007832	N/A	VPSFADIFPGAGGLPADLFAVAIAVGLFALLYWAIELIDRI

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