NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334960_029447

Scaffold Ga0334960_029447


Overview

Basic Information
Taxon OID3300034402 Open in IMG/M
Scaffold IDGa0334960_029447 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334960_029447_276_506F020517AGGLSGQRPISRDARHYFVKRANEILPKRRSWNQVQAELLEKGTDADEAMLFRGLVTEDGTEYRDMYADSRTQVTEHAA
Ga0334960_029447_3_269F091480N/AHVYVDPAGAGAREERAAFYSRRADGPFYRWFYAEGPGRWRYSRVNLDKPTLRVLSLAPWDAVPAALRKRLGEHYLEEIGPAAAPAKER

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