NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370516_019376

Scaffold Ga0370516_019376


Overview

Basic Information
Taxon OID3300034696 Open in IMG/M
Scaffold IDGa0370516_019376 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2625
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5324Long. (o)-110.7974Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080678Metagenome115N
F088087Metagenome109N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0370516_019376_1277_1633F080678GGAGGMFVKKVDAKTTPIAEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKFGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0370516_019376_1633_1824F088087AGGTGGMKASDGSIWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE
Ga0370516_019376_2_340F100012GGAGGMDREKVLQAIREAQEEYNIKDLDNFIKTAWEDGDVLQAQFVAELIERAVEILFERHFLWVHIVESEDSEIWIPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSAD
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