Scaffold SRS017139_Baylor_scaffold

Basic Information
Taxon OID	7000000007 Open in IMG/M
Scaffold ID	SRS017139_Baylor_scaffold_86848 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

7000000007 Open in IMG/M

Scaffold ID

SRS017139_Baylor_scaffold_86848 Open in IMG/M

Source Dataset Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159551223

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44046
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

44046

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N

Family

Sequences

Protein ID	Family	RBS	Sequence
SRS017139_Baylor_scaffold_86848__gene_109294	F036281	AGGAG	MITLIKVDKGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWVMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYELRQYHVKSFMRVPGSTDLWITAEREHGRWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADTIRYF
SRS017139_Baylor_scaffold_86848__gene_109295	F027205	AGGA	VASRLIVSADDILKAVKKSEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHIEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS017139_Baylor_scaffold_86848__gene_109297	F043991	GAG	MSKKNPSVIDYFSINGDVIEEANEFDGISLEDWIDKRSSIKPSWTGQYSRQMHFDLPDDTEVSFYLTLNVVYADIIFADGVRTILFKCRQKKNLTRFISRVLEMANLGPKHVHPDFRA
SRS017139_Baylor_scaffold_86848__gene_109298	F051214	AGGAG	MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVISNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS017139_Baylor_scaffold_86848__gene_109299	F071329	AGGA	MLPVAKIIISGLTSIGAGMIASKFTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS017139_Baylor_scaffold_86848__gene_109307	F067847	AGGA	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVKEDPKYKELDDKLKETELNNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold SRS017139_Baylor_scaffold_86848

Overview

Ecosystem & Geography

Associated Families

Sequences