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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 7000000226 Open in IMG/M |
| Scaffold ID | SRS014578_WUGC_scaffold_65201 Open in IMG/M |
| Source Dataset Name | Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763840445 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5389 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F070224 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| SRS014578_WUGC_scaffold_65201__gene_91630 | F070224 | N/A | MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIIGFGDSLILENGFVHKADRYPNAKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTKRFSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEACIIH |
| SRS014578_WUGC_scaffold_65201__gene_91631 | F070224 | GAG | MRRLLFLLLTLLHCTAWSQVYNAPDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |