NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C2648433

Scaffold C2648433


Overview

Basic Information
Taxon OID7000000388 Open in IMG/M
Scaffold IDC2648433 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 160765029
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4606
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080166Metagenome115N
F081455Metagenome114N
F099453Metagenome103N

Sequences

Protein IDFamilyRBSSequence
C2648433__gene_149409F081455N/AKLNLKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNDVKYYADIYADLNKIDLDHHLISSAKKR
C2648433__gene_149410F080166N/AMEVTFNSILKRLGNDVRENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS
C2648433__gene_149412F099453AGGAGGMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIIIHELTHVDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLIGLSDVTYSFKNPAVIAMSKLEHMIGKKFKEFNSNDIEIVYVDRLKNYYKIPVCVNRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGV

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