NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS024381_LANL_scaffold_20904

Scaffold SRS024381_LANL_scaffold_20904


Overview

Basic Information
Taxon OID7000000406 Open in IMG/M
Scaffold IDSRS024381_LANL_scaffold_20904 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2945
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027205Metagenome195N
F036281Metagenome170N
F074985Metagenome119N

Sequences

Protein IDFamilyRBSSequence
SRS024381_LANL_scaffold_20904__gene_22465F074985AGGAGGMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTEEIKDLENIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS024381_LANL_scaffold_20904__gene_22466F036281GAGMFSIIRVSEGPVDIYELRMRYLAKLKETDGVMLPTFIYRNKSLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYDAQEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSSDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNAKGHQSYDWVLENVEWAADTIRYF
SRS024381_LANL_scaffold_20904__gene_22467F027205AGGAVASRLIVSADDILKAVKDSEEFEKKALSEARKRDRAEGKPPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPKRIRK
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