Scaffold SRS077736_LANL_scaffold_15998

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRS077736_LANL_scaffold_15998

Scaffold SRS077736_LANL_scaffold_15998

Overview

Basic Information
Taxon OID	7000000622 Open in IMG/M
Scaffold ID	SRS077736_LANL_scaffold_15998 Open in IMG/M
Source Dataset Name	Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22535
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (69.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F103430	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
SRS077736_LANL_scaffold_15998__gene_19763	F076191	AGGA	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS077736_LANL_scaffold_15998__gene_19767	F103430	GAGG	MEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLGELKEVLDQEAIAYQIENKINLI

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