NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold SRS016037_WUGC_scaffold_28661

Scaffold SRS016037_WUGC_scaffold_28661


Overview

Basic Information
Taxon OID7000000665 Open in IMG/M
Scaffold IDSRS016037_WUGC_scaffold_28661 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29918
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103430Metagenome101N
F105376Metagenome100N

Sequences

Protein IDFamilyRBSSequence
SRS016037_WUGC_scaffold_28661__gene_43547F103430AGGAGMIEQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDEQQKVMNTLNELKEVLDQEAIAYQIENDLQLI
SRS016037_WUGC_scaffold_28661__gene_43550F105376AGAAGMNEKPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.