Sample 2035918007

Overview

Basic Information
IMG/M Taxon OID	2035918007 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045251 \| Gp0051578 \| Ga0011014
Sample Name	Coalbed microbial communities from New Mexico, USA - 340
Sequencing Status	Permanent Draft
Sequencing Center	Virginia Polytechnic Institute and State University
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	106389413
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Coalbed Water Microbial Communities From New Mexico, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → coal mine → underground water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	New Mexico
Coordinates	Lat. (^o)	36.728056	Long. (^o)	-108.220833	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002196	Metagenome / Metatranscriptome	584	Y
F015738	Metagenome / Metatranscriptome	252	Y
F017851	Metagenome / Metatranscriptome	238	Y
F105430	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F002196

Metagenome / Metatranscriptome

584

F015738

Metagenome / Metatranscriptome

252

F017851

Metagenome / Metatranscriptome

238

F105430

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Coalbed_GAIGPUK02FXJQE	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	539	Open in IMG/M
Coalbed_GAIGPUK02HJKZ9	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	530	Open in IMG/M
Coalbed_GAIGPUK02IDWRS	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	522	Open in IMG/M
Coalbed_GAIGPUK02JH6Z7	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	555	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Coalbed_GAIGPUK02FXJQE

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

539

Open in IMG/M

Coalbed_GAIGPUK02HJKZ9

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales

530

Open in IMG/M

Coalbed_GAIGPUK02IDWRS

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium

522

Open in IMG/M

Coalbed_GAIGPUK02JH6Z7

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales

555

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Coalbed_GAIGPUK02FXJQE	Coalbed2_4493010	F015738	VPESDRPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPESGRIEGMSWCLHFDRPIDHRLVKEDRPPCIEERHGCAGCPESTYRVHRVTDR
Coalbed_GAIGPUK02HJKZ9	Coalbed2_4466020	F017851	VARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQKICKILKDEVERMPRETKRALAVAAHLLPADEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI
Coalbed_GAIGPUK02IDWRS	Coalbed2_4716090	F002196	AQQIHAERHGAHTFLPGTRLSFXEAAKRTGIRSDRQRYYDAIEDLEYEGAIEWDKSARYARGDKHYLITERGLRML
Coalbed_GAIGPUK02JH6Z7	Coalbed2_3721280	F105430	MTSASSQQFFETFPPNVARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQRSARS

Scaffold ID

Protein ID

Family

Sequence

Coalbed_GAIGPUK02FXJQE

Coalbed2_4493010

F015738

VPESDRPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPESGRIEGMSWCLHFDRPIDHRLVKEDRPPCIEERHGCAGCPESTYRVHRVTDR

Coalbed_GAIGPUK02HJKZ9

Coalbed2_4466020

F017851

VARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQKICKILKDEVERMPRETKRALAVAAHLLPADEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI

Coalbed_GAIGPUK02IDWRS

Coalbed2_4716090

F002196

AQQIHAERHGAHTFLPGTRLSFXEAAKRTGIRSDRQRYYDAIEDLEYEGAIEWDKSARYARGDKHYLITERGLRML

Coalbed_GAIGPUK02JH6Z7

Coalbed2_3721280

F105430

MTSASSQQFFETFPPNVARAILEGRPLRIHAAKVSVVRDKTGAAFAIDTLPRDGRPKEWERTTQRSARS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2035918007: Coalbed microbial communities from New Mexico, USA - 340

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences