Sample 2044078001

Overview

Basic Information
IMG/M Taxon OID	2044078001 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0045634 \| Gp0051656 \| Ga0010874
Sample Name	Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL
Sequencing Status	Permanent Draft
Sequencing Center	University of Illinois, Urbana-Champaign
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	39566506
Sequencing Scaffolds	10
Novel Protein Genes	11
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	UIUC Energy Farm, Urbana, Illinois 61801
Coordinates	Lat. (^o)	40.109	Long. (^o)	-88.204	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002440	Metagenome / Metatranscriptome	559	Y
F003632	Metagenome / Metatranscriptome	476	Y
F015390	Metagenome / Metatranscriptome	255	Y
F024398	Metagenome / Metatranscriptome	206	Y
F030200	Metagenome / Metatranscriptome	186	Y
F032777	Metagenome	179	Y
F033186	Metagenome	178	Y
F064546	Metagenome / Metatranscriptome	128	Y
F084786	Metagenome / Metatranscriptome	112	Y
F087615	Metagenome / Metatranscriptome	110	Y
F105794	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F002440

Metagenome / Metatranscriptome

559

F003632

Metagenome / Metatranscriptome

476

F015390

Metagenome / Metatranscriptome

255

F024398

Metagenome / Metatranscriptome

206

F030200

Metagenome / Metatranscriptome

186

F032777

Metagenome

179

F033186

Metagenome

178

F064546

Metagenome / Metatranscriptome

128

F084786

Metagenome / Metatranscriptome

112

F087615

Metagenome / Metatranscriptome

110

F105794

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
ZMR_F548DK201B7NFL	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
ZMR_F548DK201CLD91	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	500	Open in IMG/M
ZMR_F548DK201CN36G	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
ZMR_F548DK201DTLK7	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
ZMR_F548DK202G98CN	Not Available	511	Open in IMG/M
ZMR_F548DK202GRL3Y	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
ZMR_F548DK202HC07B	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	505	Open in IMG/M
ZMR_F548DK202HS3LC	Not Available	520	Open in IMG/M
ZMR_F548DK202J1U3U	Not Available	525	Open in IMG/M
ZMR_F5IW0KN15JA9MI	Not Available	509	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

ZMR_F548DK201B7NFL

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

514

Open in IMG/M

ZMR_F548DK201CLD91

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

500

Open in IMG/M

ZMR_F548DK201CN36G

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

504

Open in IMG/M

ZMR_F548DK201DTLK7

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

508

Open in IMG/M

ZMR_F548DK202G98CN

Not Available

511

Open in IMG/M

ZMR_F548DK202GRL3Y

All Organisms → cellular organisms → Bacteria → Proteobacteria

503

Open in IMG/M

ZMR_F548DK202HC07B

All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium

505

Open in IMG/M

ZMR_F548DK202HS3LC

Not Available

520

Open in IMG/M

ZMR_F548DK202J1U3U

Not Available

525

Open in IMG/M

ZMR_F5IW0KN15JA9MI

Not Available

509

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
ZMR_F548DK201B7NFL	ZMR_1437100	F003632	MSERDDQGTVVELLLREPEIVAWLDDHRRPEPEEAPEDDEPPQAA
ZMR_F548DK201CLD91	ZMR_1285910	F032777	MRERVQYGITFSSTKSGDFGAFVRYSEPGVNLRLHRGGRLRGHYPHLEGTVAKRMRIADPRQASARAAELRAMVKEWCALGDAARRAPKPR
ZMR_F548DK201CN36G	ZMR_1755670	F030200	VLEVVVQAPVGEAEYLYEGEQAKGELNLAVDPALRGISGSDRNRIPVARVESVEVFVASVSSMFRLNRFWLLCLSFSTA
ZMR_F548DK201DTLK7	ZMR_2137930	F087615	VIIGSSLAAWRARKIPKWFGQAGITGGVTVLAVGLVEGAADWTLAGDAVYASSLGFMVWVVVTATYLLRR
ZMR_F548DK202G98CN	ZMR_1099170	F084786	TKWFAAIAVFCNGGAGGIGFYDQKSATTQASGAFRLSPRVGDRLRISISRNVAGHQDSFTVTNLRTGRSQTVRVTTSTAVVYHHAFVGSEIDRNADVMPLPATSKLLWNFRNSRVITYGGVRGTFLGPWATVKEIDRTSAGVTVMYPATCPPAAPTSALTCTPPLDHVRS
ZMR_F548DK202GRL3Y	ZMR_661580	F064546	VATQSPYHMEDPAIRREFEAELGREGVASRMNPAWYERAPTEGEDLPPNM
ZMR_F548DK202HC07B	ZMR_2522350	F002440	DQLYEVMIKMSLMVEATAPTYGLSIWATTDAGKPSLRWAEGLEDTEIAVAEGAIAELFASKGRPQPAKEGDQAIYLLLALPSGAREGAALYGRCVRPLSEQQAKDLNALSDVAHLAHAHQSSGVIAVGQKPVAAMPSLSSLPGMVFSSRAMSEVARNVERIKDSNST
ZMR_F548DK202HS3LC	ZMR_1191940	F015390	NPILASSTVLFTILFSLVFGIACGYAVISGILHAFARRQVETQAPSTAVIATTVSSH
ZMR_F548DK202J1U3U	ZMR_2194420	F024398	MATFDVTKKLDIYHTLYRLNRSFAAIVMHCQTLEGTKFFPSKSLRNFQGFAQELQAEINQELLEILHGTELEDWNRFGKVRQAREKELSDPD
ZMR_F5IW0KN15JA9MI	ZMR_1462800	F033186	MNKVNNKIPWGLAICTLGVTIASAFNGTSLLGLASITGGALALVTALLARQQMEKTMLNPELAAKLK
ZMR_F5IW0KN16J0S6O	ZMR_651230	F105794	GWMVYRQTNDFGAFTPDAVYDVLGAFATIHGLAREGRVWKGGLPKNLFQFAATGRAFTKHQSYDAGMPIPLQVGLSATLGRLAEALG

Scaffold ID

Protein ID

Family

Sequence

ZMR_F548DK201B7NFL

ZMR_1437100

F003632

MSERDDQGTVVELLLREPEIVAWLDDHRRPEPEEAPEDDEPPQAA

ZMR_F548DK201CLD91

ZMR_1285910

F032777

MRERVQYGITFSSTKSGDFGAFVRYSEPGVNLRLHRGGRLRGHYPHLEGTVAKRMRIADPRQASARAAELRAMVKEWCALGDAARRAPKPR

ZMR_F548DK201CN36G

ZMR_1755670

F030200

VLEVVVQAPVGEAEYLYEGEQAKGELNLAVDPALRGISGSDRNRIPVARVESVEVFVASVSSMFRLNRFWLLCLSFSTA

ZMR_F548DK201DTLK7

ZMR_2137930

F087615

VIIGSSLAAWRARKIPKWFGQAGITGGVTVLAVGLVEGAADWTLAGDAVYASSLGFMVWVVVTATYLLRR

ZMR_F548DK202G98CN

ZMR_1099170

F084786

TKWFAAIAVFCNGGAGGIGFYDQKSATTQASGAFRLSPRVGDRLRISISRNVAGHQDSFTVTNLRTGRSQTVRVTTSTAVVYHHAFVGSEIDRNADVMPLPATSKLLWNFRNSRVITYGGVRGTFLGPWATVKEIDRTSAGVTVMYPATCPPAAPTSALTCTPPLDHVRS

ZMR_F548DK202GRL3Y

ZMR_661580

F064546

VATQSPYHMEDPAIRREFEAELGREGVASRMNPAWYERAPTEGEDLPPNM

ZMR_F548DK202HC07B

ZMR_2522350

F002440

DQLYEVMIKMSLMVEATAPTYGLSIWATTDAGKPSLRWAEGLEDTEIAVAEGAIAELFASKGRPQPAKEGDQAIYLLLALPSGAREGAALYGRCVRPLSEQQAKDLNALSDVAHLAHAHQSSGVIAVGQKPVAAMPSLSSLPGMVFSSRAMSEVARNVERIKDSNST

ZMR_F548DK202HS3LC

ZMR_1191940

F015390

NPILASSTVLFTILFSLVFGIACGYAVISGILHAFARRQVETQAPSTAVIATTVSSH

ZMR_F548DK202J1U3U

ZMR_2194420

F024398

MATFDVTKKLDIYHTLYRLNRSFAAIVMHCQTLEGTKFFPSKSLRNFQGFAQELQAEINQELLEILHGTELEDWNRFGKVRQAREKELSDPD

ZMR_F5IW0KN15JA9MI

ZMR_1462800

F033186

MNKVNNKIPWGLAICTLGVTIASAFNGTSLLGLASITGGALALVTALLARQQMEKTMLNPELAAKLK

ZMR_F5IW0KN16J0S6O

ZMR_651230

F105794

GWMVYRQTNDFGAFTPDAVYDVLGAFATIHGLAREGRVWKGGLPKNLFQFAATGRAFTKHQSYDAGMPIPLQVGLSATLGRLAEALG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2044078001: Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences