Basic Information | |
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IMG/M Taxon OID | 2140918005 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046158 | Gp0051718 | Ga0026260 |
Sample Name | Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-225-485cm |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 310086717 |
Sequencing Scaffolds | 44 |
Novel Protein Genes | 50 |
Associated Families | 40 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Predicted Viral | 4 |
Not Available | 30 |
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 4 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844 | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin419 | 1 |
All Organisms → Viruses | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) |
Location Information | ||||||||
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Location | Arctic Ocean | |||||||
Coordinates | Lat. (o) | 74.0678 | Long. (o) | -145.54687 | Alt. (m) | N/A | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000918 | Metagenome / Metatranscriptome | 834 | Y |
F003058 | Metagenome / Metatranscriptome | 510 | Y |
F003647 | Metagenome / Metatranscriptome | 475 | Y |
F004192 | Metagenome / Metatranscriptome | 449 | Y |
F005129 | Metagenome / Metatranscriptome | 411 | Y |
F005243 | Metagenome / Metatranscriptome | 407 | Y |
F005817 | Metagenome / Metatranscriptome | 389 | N |
F008577 | Metagenome / Metatranscriptome | 331 | Y |
F008695 | Metagenome / Metatranscriptome | 329 | Y |
F009040 | Metagenome / Metatranscriptome | 324 | Y |
F010928 | Metagenome / Metatranscriptome | 297 | N |
F012505 | Metagenome / Metatranscriptome | 280 | Y |
F015149 | Metagenome / Metatranscriptome | 257 | Y |
F015230 | Metagenome | 256 | N |
F016205 | Metagenome / Metatranscriptome | 249 | Y |
F019836 | Metagenome / Metatranscriptome | 227 | Y |
F022015 | Metagenome / Metatranscriptome | 216 | Y |
F023446 | Metagenome / Metatranscriptome | 210 | Y |
F023593 | Metagenome / Metatranscriptome | 209 | N |
F026402 | Metagenome / Metatranscriptome | 198 | Y |
F033501 | Metagenome / Metatranscriptome | 177 | Y |
F033809 | Metagenome / Metatranscriptome | 176 | N |
F036311 | Metagenome / Metatranscriptome | 170 | N |
F038157 | Metagenome / Metatranscriptome | 166 | Y |
F043412 | Metagenome / Metatranscriptome | 156 | Y |
F049760 | Metagenome | 146 | Y |
F051049 | Metagenome / Metatranscriptome | 144 | Y |
F054910 | Metagenome / Metatranscriptome | 139 | N |
F060921 | Metagenome | 132 | N |
F062159 | Metagenome / Metatranscriptome | 131 | Y |
F071637 | Metagenome | 122 | Y |
F078926 | Metagenome | 116 | Y |
F080238 | Metagenome / Metatranscriptome | 115 | Y |
F082713 | Metagenome / Metatranscriptome | 113 | N |
F085735 | Metagenome / Metatranscriptome | 111 | Y |
F092857 | Metagenome / Metatranscriptome | 107 | Y |
F095487 | Metagenome | 105 | N |
F099974 | Metagenome / Metatranscriptome | 103 | Y |
F103255 | Metagenome / Metatranscriptome | 101 | N |
F103885 | Metagenome / Metatranscriptome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
contig00034 | All Organisms → Viruses → Predicted Viral | 2789 | Open in IMG/M |
contig00227 | Not Available | 1365 | Open in IMG/M |
contig00254 | Not Available | 1311 | Open in IMG/M |
contig00382 | Not Available | 1153 | Open in IMG/M |
contig00383 | All Organisms → Viruses → Predicted Viral | 1152 | Open in IMG/M |
contig00388 | All Organisms → Viruses → Predicted Viral | 1147 | Open in IMG/M |
contig00409 | All Organisms → Viruses → Predicted Viral | 1126 | Open in IMG/M |
contig00552 | Not Available | 1008 | Open in IMG/M |
contig00601 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 965 | Open in IMG/M |
contig00615 | Not Available | 963 | Open in IMG/M |
contig00650 | Not Available | 946 | Open in IMG/M |
contig00672 | Not Available | 931 | Open in IMG/M |
contig00822 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 873 | Open in IMG/M |
contig00856 | Not Available | 860 | Open in IMG/M |
contig00864 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 854 | Open in IMG/M |
contig00927 | Not Available | 836 | Open in IMG/M |
contig00976 | Not Available | 820 | Open in IMG/M |
contig01046 | Not Available | 799 | Open in IMG/M |
contig01282 | Not Available | 744 | Open in IMG/M |
contig01292 | Not Available | 745 | Open in IMG/M |
contig01545 | Not Available | 694 | Open in IMG/M |
contig01741 | Not Available | 658 | Open in IMG/M |
contig01774 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844 | 662 | Open in IMG/M |
contig01825 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin419 | 657 | Open in IMG/M |
contig02036 | Not Available | 626 | Open in IMG/M |
contig02060 | Not Available | 617 | Open in IMG/M |
contig02392 | All Organisms → Viruses | 582 | Open in IMG/M |
contig02442 | Not Available | 579 | Open in IMG/M |
contig02541 | Not Available | 572 | Open in IMG/M |
contig02700 | Not Available | 556 | Open in IMG/M |
contig02947 | Not Available | 539 | Open in IMG/M |
contig03104 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 530 | Open in IMG/M |
contig03116 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 524 | Open in IMG/M |
GOZG4CW03F2QGA | Not Available | 519 | Open in IMG/M |
GOZG4CW03FTYNX | Not Available | 525 | Open in IMG/M |
GOZG4CW03FYAFG | Not Available | 538 | Open in IMG/M |
GOZG4CW03FZZ6C | Not Available | 512 | Open in IMG/M |
GOZG4CW03GKHFZ | Not Available | 500 | Open in IMG/M |
GOZG4CW03GKM4Z | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 534 | Open in IMG/M |
GOZG4CW03GS1MU | Not Available | 534 | Open in IMG/M |
GOZG4CW03GVWJU | Not Available | 536 | Open in IMG/M |
GOZG4CW03GWOK4 | Not Available | 511 | Open in IMG/M |
GQ8TDHF02IOF0D | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 508 | Open in IMG/M |
GQ8TDHF02IZSI6 | Not Available | 509 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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contig00034 | ASHM485C_01739090 | F004192 | MKQDFNEWMASIGNIYYADNNLMSQAFEKLNNNEEVQCT |
contig00227 | ASHM485C_00970230 | F033501 | INEMDYLAQVHFAEFGYDTCSHSEKQAVIKLLLHNTK |
contig00254 | ASHM485C_01167310 | F022015 | MYKNYITWEQSFKEVNESILRHEIICAIASEVAGESVNNLCGFTEDQKESVWCDYYNTTELCE |
contig00382 | ASHM485C_02119980 | F010928 | METQEFMGSGQLVDRLTAQVRDKGFAMALLKKRGDMNPDGSLTAKGEEANAMNSGQRATKRASEKSGK |
contig00382 | ASHM485C_02119990 | F000918 | MYKTNNQCWNEVSNSIKESNIRTKICIEMFGQENLIGLSDEQRELFWQSV |
contig00383 | ASHM485C_02126180 | F003058 | MTEKEMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADVEFGTITEDEIIAEELVKLQDRLNQLEAKEDYEAASIVANKIKHLKNKYNL |
contig00388 | ASHM485C_02158380 | F019836 | MQKANLELPVKQFHQLHDLLGDILDHESETNDFNMENSDIELIEDIRTELFNQIPDEKTYTDYALTGRSSNPSIQPGKLYKIVEKTSKYGFQLEVEDGEIIFCLFNGCAFLTVEIGPLLT |
contig00388 | ASHM485C_02158390 | F062159 | MEDLTHYIEIDWSGVCEDYDLKHGDISPHQTFEIDHALNKINEVLNEFIKQNR |
contig00409 | ASHM485C_02320870 | F023593 | MSKIKEIDELAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG |
contig00552 | ASHM485C_03388950 | F005129 | MNYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGLKTEWGADINETEMEFYVNDKRCKYVGFKELYTQLYGNSFNTWEVDLTRQIEEVVAKRIAKEYPGCDVNF |
contig00601 | ASHM485C_03755860 | F038157 | MGLDVSALSDFNNEVAGELITKMVYGGSTMEYITIKEGVKFQEPINLMEVDLVLQNGTCVSTPSGS |
contig00601 | ASHM485C_03755870 | F085735 | MDRTYLGISALERGSYNETFALATNYSELLVNQFQKKNDQFLWSAISGSNPAGCASDGLVKIISGSTTGVVSAGTGDATLANLEVMLAALSSDVADRDDLTYFMSVSKFRSLISDIRTQNNFYFDPVSISNRGGILEIGMPFQNAKIVGTVGLQGSNRIVLGPAKQIVAGTDLMSDFSEFQLWYDINSDQLKHRISTKLGVNVAYPEFW |
contig00615 | ASHM485C_03858450 | F012505 | MSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSDEIIVREVSDIKYKY |
contig00650 | ASHM485C_04113670 | F005243 | MSNQKTNPSLDQKEPELSKEELAARREEITAFYKDNIKHLEIQAEYEMLLSTIEKARAERMQAQMFMSQAYADQKEGSGEVDSEEATAFKQAMENASKP |
contig00672 | ASHM485C_04279990 | F023446 | MSKNVEFIDQLCELMGGDRFFLCDQYDQDDLFEMQDNIANLIAENANDGLGLAKYMVNKFPSTFKTEQV |
contig00822 | ASHM485C_05423850 | F003647 | MVMCEWTLADVKNRASNKAFAKVTILALDIETYKQDLREGNIGGVTYDEFKQIITGYETELQIWNYITELIEKQ |
contig00822 | ASHM485C_05423860 | F005817 | MRSNLLTRLKPEYKRGLEDNKLRYPAMISDLEFLLSQQFYYNDLTVNQVLNIFVFSDMEYLDRKNFDWRYGEDVFNVENNIA |
contig00856 | ASHM485C_05673870 | F092857 | MLNKEVQNELNKFAKYVIQQSRSNLTKSDKNVSKDLYNSLGYKLEE |
contig00864 | ASHM485C_05735840 | F082713 | MKIKGLTEQDCAFVYYVLRDWSQNHSNYDEQDVDDVYEIAK |
contig00927 | ASHM485C_06207380 | F080238 | MKEETEFEKMLKRLESQPVPERTCSINDDTCESCSG |
contig00976 | ASHM485C_06567300 | F095487 | MQLDKKFTPANVITVVLTVAFALMAWQDVKGQVEVNSSSIHKGQVVAEEMRDNVHTLKVDVALLKQDSINAAASRDEIKANQAEILKLLRNK |
contig01046 | ASHM485C_02632270 | F000918 | MNLTNQQAWDQVTETYNESIRRTDICKAMFDQENLIGLTDEQRDQFWSAV |
contig01282 | ASHM485C_01374780 | F103255 | MNQNPYNNMKLTADILQELSMYVQVNYEDDWYLQEKVNELKEKLYENDR |
contig01292 | ASHM485C_01448220 | F000918 | MYKTNQQCWDEVTQSIIESERRTKICIDMFGQENLIGLTDEQKELFWQSV |
contig01545 | ASHM485C_03333520 | F022015 | MRQYRTWQQAFDEMNASVLKHEIIIAIASEVVGKPVENLIGFTNEQRDLVWNDYYNTTEL |
contig01741 | ASHM485C_04811340 | F036311 | MKIYVDTITKELVLDNGIEYRYPAYCEIQRQKQGDFIIIKTTNNVAVLDKTIYSDLQDEAGTAYASFAALKTALDSYFDSTL |
contig01774 | ASHM485C_05057250 | F009040 | GSSSGIDPKPLQAAVVKSDGGERCRNAGTKIPAGTVEGGERKRTTAEASKAD |
contig01825 | ASHM485C_05445030 | F016205 | MSLAELGNTKICYPENETWFICWDNTRENVMAYGSILPTQCMETPWEQVDYYDNEAEWAAILLANGINPFPDPEPEEGEE |
contig02036 | ASHM485C_01886060 | F008695 | MNKIKNEVTKVEHVWCGPNDRWIYIEYNEQREIAGLNFMQGDEYEYFKESWACNNPYLMAFYTTMLHTFPIEKLNVTTLNFINKVMWAFHETGLIFDKFND |
contig02036 | ASHM485C_01886070 | F000918 | TNQQCWDEVTQSIIESERRTEICLEMFGQENLIGLTNDQRDLFWESI |
contig02060 | ASHM485C_03668500 | F043412 | DLAAANQRLAVVNRPKITQDQMTEIQDAINEIVSNIDFTDCNNYDVDFEIDYDSRLAISSIEFNNTHEIVDDISSEIECLFNVIQPEDEA |
contig02392 | ASHM485C_02192090 | F015149 | RTRLVENYDELFGQGGNTSLDAVSQFSTKWGWYNSIYGLAQGDITRYEDITKLGVHECFMMLSFMKDKAEVEAKRIKQNFK |
contig02442 | ASHM485C_02571360 | F054910 | MGLGLGLGIWWPTQTSIIPGLLKALCARATYCENKTCTTATLLAIENIK |
contig02541 | ASHM485C_03305690 | F000918 | MYKTNQQCWDEVTQSIIESERRTEICIDMFGQENLIGLTDEQRELFWQSV |
contig02700 | ASHM485C_04489860 | F103885 | MNTLLQQLKPKYIKKIKSSKYPFKSERILAKLESSKWYGELTINELSEIYDMCDVDKLRVSAWDMRFGDNVLIKENE |
contig02947 | ASHM485C_06355130 | F103255 | MRLTADILQELSMYVQVNYEDDWYLQEKVNELKEKLYENDR |
contig03104 | ASHM485C_00040250 | F003647 | MVMCEWTLADVKSRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ |
contig03116 | ASHM485C_00124680 | F033809 | KLKDAQDATDHGRAWCKRQPKKWALVAQHIIQKPDEVSTFMRKNKITRSFYYDVQTELMADPESSEIRNAWASEISSVMFQGLDTYRQAQDQYSNRVENGEIQMDGNELFKQGKSLQAFSDIHAKLTGNNIQRVVVEHKTTLDEAEEYARKMLEGIQEVEIVD |
GOZG4CW03F2QGA | ASHM485C_00555450 | F015230 | MNDSGDITAKFTATERAIDKLQQPTIEIERTRNAIRETQKRNDAIRAELEAVQQRIEKGYKAIRESSDGEQRIASVKKEISRLGGLIAWQDNRSKQFKTIIDRGY |
GOZG4CW03FTYNX | ASHM485C_01578510 | F008577 | MKLNWEEIKDIANRLDEIIGDNFHDAMWITLSERKYIDHDSEVSDEDILAIKEQLKRIL |
GOZG4CW03FYAFG | ASHM485C_00931400 | F033501 | MNALQFIKEMDRLAEVHFAEFGYDTCNQHEKQAVIKLLLDNTK |
GOZG4CW03FZZ6C | ASHM485C_05310260 | F008695 | MDYGIDKVEHVWDNSNDRWIYLEYNKQRKIIGMNFMQGDFYEGFKKDWCKSDAGLTEFYESMLYTFPIEKASVSTLSFINKCMWTFHTAIAQREENPQ |
GOZG4CW03GKHFZ | ASHM485C_01483320 | F071637 | MSTFIERETENGVHQDSYFTNDGGVYSEFKQDITQLLEDNKNKRNATSDWVKFDPKQNYHQVLDLSMTDVMRIKKEHGIDLLGENVDYKYFFKLIETHYPYMKTTTARL |
GOZG4CW03GKM4Z | ASHM485C_02904420 | F051049 | MNVEQKLSNLEASYINWMEKHNSYRDAGYIWWEREKDCQEWCPKEKTYKPMSITKTLRIMRGWVKQQKSFC |
GOZG4CW03GS1MU | ASHM485C_03085880 | F099974 | MGAETKQIAKISYVTDTDVGYYEIGEVEGAFQEAELRDYIKRFGHEKLCTRLGYMQFQVWDALREINGERDEENSPK |
GOZG4CW03GVWJU | ASHM485C_01726390 | F026402 | MFQDIGKEIILRLNATSAFTTANGGSNRVFPVIIPQGVTYPSTTFEITNVSNFMSKGNSLKSCDVSIRIACFADVYLTTYSQAKAVVEALDLYEVDYTEDGVTYTAKFRFETLDDEYFKSPEKFYKNVIFNCLIIKN |
GOZG4CW03GWOK4 | ASHM485C_00158940 | F078926 | MKIVIELSEDEAEEMVELGQQLLAVVARLEQLETRLE |
GOZG4CW03GWOK4 | ASHM485C_00158950 | F049760 | MEATLMNRDRVMVELEEYLNTQEEDYVDPAERRQEMAERAADEAMSKWDDE |
GQ8TDHF02IOF0D | ASHM485C_04307470 | F003647 | TRKQRSIMVMCEWTLAEVKNRASNKAFAKVTILKLDIESYKQELKNGTYGGITHAEAEQVLEGYKTELQVWNYITELIEKQ |
GQ8TDHF02IZSI6 | ASHM485C_02565650 | F060921 | LLDRIKPMIFRLYNANESVKASRVSITTNNHIKSFDGINYPNLDYTFHLDNGNIVTKKELAFEYNSIIESMVRHVYDKSHNTIPKV |
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