NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000367

3300000367: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL



Overview

Basic Information
IMG/M Taxon OID3300000367 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063439 | Gp0054159 | Ga0026665
Sample NameAlkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size488672021
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
Not Available1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAlkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → lake sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationRussia: Kulunda Steppe
CoordinatesLat. (o)52.1Long. (o)79.14Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001230Metagenome / Metatranscriptome741Y
F003605Metagenome / Metatranscriptome477Y
F009686Metagenome / Metatranscriptome314Y
F015517Metagenome / Metatranscriptome254Y
F021781Metagenome / Metatranscriptome217Y
F036417Metagenome / Metatranscriptome170Y
F043952Metagenome / Metatranscriptome155N
F085746Metagenome / Metatranscriptome111Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SS_2KS_010_SOILDRAFT_10014253All Organisms → cellular organisms → Bacteria3445Open in IMG/M
SS_2KS_010_SOILDRAFT_10015556All Organisms → cellular organisms → Bacteria3271Open in IMG/M
SS_2KS_010_SOILDRAFT_10020178All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2762Open in IMG/M
SS_2KS_010_SOILDRAFT_10034209Not Available1935Open in IMG/M
SS_2KS_010_SOILDRAFT_10064401All Organisms → Viruses → Predicted Viral1186Open in IMG/M
SS_2KS_010_SOILDRAFT_10073341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia1067Open in IMG/M
SS_2KS_010_SOILDRAFT_10090363All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage903Open in IMG/M
SS_2KS_010_SOILDRAFT_10111291All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium768Open in IMG/M
SS_2KS_010_SOILDRAFT_10163635All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage582Open in IMG/M
SS_2KS_010_SOILDRAFT_10196387All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SS_2KS_010_SOILDRAFT_10014253SS_2KS_010_SOILDRAFT_100142532F036417MVYYARTPLRFFIPTVLVRLMTEDGEVAFRARWKSRPIELQRCILFKLRRGQPLWFEDEAGRNLCFKPERVWAAMVDGR*
SS_2KS_010_SOILDRAFT_10015556SS_2KS_010_SOILDRAFT_100155563F036417MVYFARVPIRTMIPTVLVQLATDDGDIMFRARWKRSPLELQRLILFRMRRGKPLWFEDDRGHDLCFRPEAVRAALVDGRR*
SS_2KS_010_SOILDRAFT_10020178SS_2KS_010_SOILDRAFT_100201784F003605MAIGDDASSAGFPLVPDTGEEGRKRWGAREINRTRDLVAQVKNLIPNSKNTYRAAAGITYSSSAPSGGDNGDIHHRVLLGTVTTYVRH
SS_2KS_010_SOILDRAFT_10034209SS_2KS_010_SOILDRAFT_100342094F009686MNERQMFEKSFERPSNFFELSPEEQWAIDKDLGILDWEGRDLTPEDRKRFFAHYITE*
SS_2KS_010_SOILDRAFT_10064401SS_2KS_010_SOILDRAFT_100644012F003605MAIGDDATAAGFPLVPDTGEEGRKRWGGREINRTRDFVAQVRNLVPVGRTAYRTASGISSGTEEPTGGSNGDLYFRIVGGNVVPYVRHNNAWVGG*
SS_2KS_010_SOILDRAFT_10073341SS_2KS_010_SOILDRAFT_100733413F001230PSASASGAEPVAATANEAIRNAHEWFEHNSGWAPPDPDTLHEWVSDGVCRCPDECLVAPAAWCEHGLASWALILADLD*
SS_2KS_010_SOILDRAFT_10090363SS_2KS_010_SOILDRAFT_100903631F021781MGLAKYRKVYGKNGSGRFVVSEGIAPSEYLLPHEDLPTLYTDLEDDRFEIVITKGTILGVVTDDNG
SS_2KS_010_SOILDRAFT_10111291SS_2KS_010_SOILDRAFT_101112912F015517MYWRSIREADLPECLALQPACMGDSIVGREAALRAWQRLLDSPAFQASVIESEHLVAGHRIVACGLGVFVDRAFVDRELASPRPDLNSRIIASIVSGESVVLSREAIAVGNAGDGLDFVNLYGTWRDGVMDDDALAQVHSLLGTSFVENISGYRFNRVLKEAIGRPRIELARATGTYRLVAEFPERDSALAVVTPESARAAPYSYAA
SS_2KS_010_SOILDRAFT_10163635SS_2KS_010_SOILDRAFT_101636352F043952VGKVIAVEKFAENFDDGLLSYMQLPKDPGAVKEVYSLTKEGPYSGQLGIRANLDVTNVVGAVRVNLTL*
SS_2KS_010_SOILDRAFT_10196387SS_2KS_010_SOILDRAFT_101963871F085746NFDDGLLSYMQLPSDPGAVKHVYELTKEGNYQGRLGIRANLDVENVLGAVRVNLTL*
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