Sample 3300000504

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000504

3300000504: Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Marine photosynthetic community that grows at 940nm

Overview

Basic Information
IMG/M Taxon OID	3300000504 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075607 \| Gp0055182 \| Ga0011556
Sample Name	Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Marine photosynthetic community that grows at 940nm
Sequencing Status	Permanent Draft
Sequencing Center	Marine Biological Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	84361702
Sequencing Scaffolds	2
Novel Protein Genes	4
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Marsh Microbial Communities From Little Sippewissett, Woods Hole, Ma That Are Anoxygenic And Photosynthetic
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Microbial Communities From Little Sippewissett, Woods Hole, Ma That Are Anoxygenic And Photosynthetic

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Little Sippewissett Salt Marsh, Woods Hole, MA
Coordinates	Lat. (^o)	41.5758508	Long. (^o)	-70.635807	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088355	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
M940CN_1000151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila	4456	Open in IMG/M
M940CN_1007716	Not Available	666	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
M940CN_1000151	M940CN_10001518	F088355	MKNLSNKISVFAGKKGQLILAILTIALFVLAAGAPNATLGIGR*
M940CN_1007716	M940CN_10077162	F088355	MKNLTNKISVFVGRKGQLVLAILTIAIFVLAAGAPNATLGIGR*
M940CN_1007716	M940CN_10077163	F088355	MKNLSNKISVFVGRKGQLVLAILTIALFVLAAGAPNATLGIGR*
M940CN_1007716	M940CN_10077164	F088355	MKNLTNKISVFAGKKGQLVIAILTIALFVLAAGAPNATLGIGR*

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