NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300000698

3300000698: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57



Overview

Basic Information
IMG/M Taxon OID3300000698 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075432 | Gp0054325 | Ga0001980
Sample NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size9377701
Sequencing Scaffolds10
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium dehalogenans1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)N/ADepth (m).1
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000209Metagenome / Metatranscriptome1592Y
F001022Metagenome / Metatranscriptome804Y
F010721Metagenome / Metatranscriptome300Y
F011811Metagenome / Metatranscriptome287Y
F012657Metagenome278Y
F040358Metagenome / Metatranscriptome162N
F046517Metagenome / Metatranscriptome151N
F062933Metagenome / Metatranscriptome130Y
F075781Metagenome / Metatranscriptome118Y
F079486Metagenome / Metatranscriptome115Y
F091102Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12489J11917_100142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2017Open in IMG/M
JGI12489J11917_101389All Organisms → cellular organisms → Bacteria891Open in IMG/M
JGI12489J11917_101421All Organisms → cellular organisms → Bacteria → Proteobacteria878Open in IMG/M
JGI12489J11917_101637Not Available821Open in IMG/M
JGI12489J11917_101745Not Available796Open in IMG/M
JGI12489J11917_101839All Organisms → cellular organisms → Bacteria772Open in IMG/M
JGI12489J11917_101916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium dehalogenans757Open in IMG/M
JGI12489J11917_102125Not Available716Open in IMG/M
JGI12489J11917_102234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium699Open in IMG/M
JGI12489J11917_102575All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium651Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12489J11917_100142JGI12489J11917_1001423F001022MKILEIVPRDRTRLYGALVAKEAAIRKSGRGTYSRVGRRSLGSARWKHKMYKGSVQLAHDPSEIVTAKVRAATPEDERKLLSSFLGFVDRHCGDYVDTITIQYRQIR*
JGI12489J11917_101389JGI12489J11917_1013891F040358MRIAIFALAVLAGGGAAEAGQIEVISASPRHIEIAAWCWTAGSNCQQEASDVAQGYCHGSDYPHYPRRALYVRSGILERDFFSERVIFVYGAIGDLL
JGI12489J11917_101421JGI12489J11917_1014213F075781LRVDNQTKCSFSSKEPAMTAGAVIKKAFPVVMVSVLDSKDGSVEVIK*
JGI12489J11917_101637JGI12489J11917_1016372F062933KIELIPMRHIAARHVFALLVALIVGVTVFYRLPEPLPELTRAEFMAEVRAGHVRRIEIEDQEVIIAESSTRGEFRTGFDRKVDVNLPAELRALGVEVYFSKSPLGLI*
JGI12489J11917_101745JGI12489J11917_1017454F046517ESIRRDLDAVKVAFGDTWQQSHLPEGYSALMTAYSVHHFFVSESSTTK*
JGI12489J11917_101839JGI12489J11917_1018392F010721PKGRLSAGFTVPGMADAADVAMQLRERGWAPYKLRLDLEQHAWIAVVIDWKRAA*
JGI12489J11917_101916JGI12489J11917_1019161F011811MLTADQINDLHHLYWAERWPIRKIEQHLCMSWRTIKKYLEAPAQKPATRSRLSKLDPFKTTIAELLEK
JGI12489J11917_102125JGI12489J11917_1021251F012657SLLWKSGHNRSFVSQKGRDLLVCSRDFEAKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12489J11917_102234JGI12489J11917_1022341F091102PSWAIEXRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGTMHDENDPTSALLXVVPEGSYLFDYYVAVCRAXTHEEPYLPQKH*
JGI12489J11917_102575JGI12489J11917_1025752F079486VNADAIPASQLACLLYDAAEGICADVAAVMLIDRHGHFLHDPAFRRIIAAGSSITTGQPLAVIRWTAAIHALE
JGI12489J11917_102888JGI12489J11917_1028881F000209MAFVKNISNHRSSELRPVDRLTLGLVGMAVIFASLGLGEAVYRLLFFDFDGATDRLPIEMMFGLAFAWVVMRLAKRIYQQQQLTSAKINQVWDRNYRIRNAVEAIPPVPYPAHQQAIRVIRDEVDRIEWVLADIQPR*GRGRALEAAEELASATVSYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.