NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001176

3300001176: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2



Overview

Basic Information
IMG/M Taxon OID3300001176 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0055345 | Ga0003008
Sample NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size12912481
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Calyptratae → Hippoboscoidea → Glossinidae → Glossina → Glossina1
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
Not Available5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Solidesulfovibrio → Solidesulfovibrio fructosivorans1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)coniferous forest biome → land → spruce forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F001305Metagenome / Metatranscriptome727Y
F001747Metagenome / Metatranscriptome643Y
F002787Metagenome / Metatranscriptome530Y
F002903Metagenome / Metatranscriptome522Y
F009979Metagenome / Metatranscriptome310Y
F012387Metagenome / Metatranscriptome281Y
F013007Metagenome / Metatranscriptome275Y
F013206Metagenome / Metatranscriptome273Y
F018224Metagenome / Metatranscriptome236Y
F019056Metagenome / Metatranscriptome232Y
F022701Metagenome / Metatranscriptome213Y
F047796Metagenome / Metatranscriptome149N
F052078Metagenome / Metatranscriptome143N
F061214Metagenome / Metatranscriptome132Y
F068616Metagenome / Metatranscriptome124Y
F075148Metagenome / Metatranscriptome119Y
F083013Metagenome / Metatranscriptome113Y
F101194Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12655J13551_100929All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Calyptratae → Hippoboscoidea → Glossinidae → Glossina → Glossina719Open in IMG/M
JGI12655J13551_100980All Organisms → cellular organisms → Bacteria → Acidobacteria707Open in IMG/M
JGI12655J13551_101035All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium693Open in IMG/M
JGI12655J13551_101158Not Available667Open in IMG/M
JGI12655J13551_101178All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum664Open in IMG/M
JGI12655J13551_101192All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium661Open in IMG/M
JGI12655J13551_101251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium649Open in IMG/M
JGI12655J13551_101320All Organisms → cellular organisms → Bacteria → Acidobacteria639Open in IMG/M
JGI12655J13551_101702Not Available586Open in IMG/M
JGI12655J13551_101846All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus572Open in IMG/M
JGI12655J13551_101879All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
JGI12655J13551_102247All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Solidesulfovibrio → Solidesulfovibrio fructosivorans536Open in IMG/M
JGI12655J13551_102304All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
JGI12655J13551_102408Not Available524Open in IMG/M
JGI12655J13551_102471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp.521Open in IMG/M
JGI12655J13551_102652Not Available510Open in IMG/M
JGI12655J13551_102810Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12655J13551_100929JGI12655J13551_1009291F047796FAPNMNKSACNSRRFRELQELGEFLESLAVKHELVTRTLDEVRKGRSASIENIVLSDEVIFDEGLDSTITLDRRIN*
JGI12655J13551_100980JGI12655J13551_1009802F002787MDESKRQAVQFLEKEIKTYIALALYLSKEGIKERVQLGDKEVVIGSTYYKERMKEARKLVNELRKP*
JGI12655J13551_101035JGI12655J13551_1010351F012387MSSIGSQGSGVAVAKANLGDLEKMISESPSSDRVSLKLAQILRVRRSEVALLRLDKGTLRFIFPPELRSAGVLPLTGSAVAARTAATRTSFLSNSFMRV
JGI12655J13551_101136JGI12655J13551_1011361F101194TGNLHIEYCEF*NNVAIGLFGWTINTATISLLSEYFGIKGINFNLKQFLYGYDTMGAGNDYTSKDFKAKLYNAMESDDGSDPSKQLDKGKGIDKGYNEGNDESGAKPLDKGKGIDRRVHRIELGPGHCTEPPFVT*SRVFPGLDPASVFFPKTINPGPGFNVPGGEVPIQDEICKHIDYNSHILNQFKKMDLKTAIEQRDNYLKYLQVINQKTTYAQETLSKV
JGI12655J13551_101158JGI12655J13551_1011582F052078DGKIVRFAYKELSDGVAGISAKSDGRFVMIVQRSIRAPLTRKQVEDVFERASFD*
JGI12655J13551_101178JGI12655J13551_1011781F061214VLSVNSARCRLVNGFAKLTNINLALKETPINGGLTDEGPKVAEYPGR*
JGI12655J13551_101192JGI12655J13551_1011921F068616IAAYAAGERPVLARGLDYSSEEVYTYVQRIGQQYRAELRRTGGK*
JGI12655J13551_101251JGI12655J13551_1012511F009979YGATPQNPSGGVPPLAQVNFYLPAGAKVNSTGFGTCPEAVLKNTGPSGCKRNSVASPKGSALGEVTFGSERVPESASLQAFFGPGKGLFFYVDGSSPVSLEFISAGKYANSGRPPYGLELKAEVPAIATVPGAPLASTKTIDVKVGAAIRKGKRLISYGTMPRKCPKGGFPVKSELVFGGSYGGEREFGIPAETVTVTYKAPCPPKHKR*
JGI12655J13551_101297JGI12655J13551_1012972F000092VKQNLGRQSGVQNVEVRLIDGKVQVTPKDDGQIDPVQLMKATYDSGVTVAEMDVVAQGKITKDSSGNFSLQVEPNRSFVFDPNELSKGLESLAGSPTAVTVHGQLYKKPPGKKKADLSAPLKLLLLDVQ
JGI12655J13551_101320JGI12655J13551_1013201F002903RPAGHDPNHSRWHGPYGNITEAREATHQMPGVLIRSECKCVA*
JGI12655J13551_101702JGI12655J13551_1017022F001305HPCSATCSPVAAINEGATTNVITKGIKQKQSTAYSAWFGKSVVLLIAIRQCHVPMPCRIIGESVAAVRVRINPGFEMDLEKELILAVEEYVAALDNWVN*
JGI12655J13551_101846JGI12655J13551_1018461F083013LKFAGAVFIVIYTPTLTVMWGAIITRVPNALALMSFFHVFLVFAMVLNIIAGIFALLAALALLGRAGSSRTMALVASFFALIDGPLGIALGAYTLVVFVPRR*
JGI12655J13551_101879JGI12655J13551_1018792F075148FLAILAVTAWLALPWEISGTQPDAEAHGLEALGIIQQALATYQGSEGGFPSSLEGLGDRVRFESEKAQAAHYTMQYIPGKPDAEGRVKSYTLTARAGNFGYMNFYTDESGVIRGTLENRVARVQDLPIKQNL*
JGI12655J13551_102247JGI12655J13551_1022471F001747MSISPNVPTPQESYTYETNTGTPRWIAALFGVLILAVAGLAYAGHSAQSQLQTDLTKAQDQNKLLSAQLDQANSRLAELKGNIEVTQQKIGIT
JGI12655J13551_102304JGI12655J13551_1023041F013007KYFFFQYWVDSPGQEERQRRTEIVGAVGQITKSEAERKKLEFIANLKLNTDGYRIPSSRTFADAAKFYREVFAPRMLRASTFSVADGHIKHHLEHDWNEVPIEHIDIDAVNEWIWKKRQSGLSWVTVKNILRTMQRVLSCCSKDKKPPFSQEGLAIPDKDKLQMKIESRKAVSFSWF
JGI12655J13551_102408JGI12655J13551_1024081F018224MRISIALAAIMVSLPVLALAQPRWTFCVASSKSGADVWITEVFAAERDRDQLESAFKTMVVRMGGVGADAQCPMPREDKTEAVNAQFEAEDFNRKLGAKLHAVLAGG
JGI12655J13551_102471JGI12655J13551_1024711F019056TEWPAPGSADTELGVLMEPEVSHGEAEVYTRVQA*
JGI12655J13551_102652JGI12655J13551_1026521F013206QRKVRQRIKRHNRRFVLGNILNVIAFLGMLIFAAYMRHQATWMGPGWAIGICVLVFVAAGCRVWALRQTWRPETQSTRAFVELWYKRVEVRIRLIRISTYLSIGWLIFCAALMAVNWSIIGQDFRAHPKSWLVLLVVCVLMQPVLLLYWVGWLRRRKLAELAEVKSILD
JGI12655J13551_102810JGI12655J13551_1028101F022701KADALKLDNSLIRRERLIVAFATGDRDNVEKILKEEERSKYREDFLREHSLIEIQQGRFHSAELLRLQALGQTSKASNADWWVVLSALENAEARKDVQARRYESEAARSKLDLNNKIALALALARSGRTEEAGKLADQTNAERPLDTIVQNYFIPTIRATIKLQQHD
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