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Sample 3300001633
3300001633: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007
Overview
Basic Information
IMG/M Taxon OID 3300001633 Open in IMG/M GOLD Reference Gs0085736 | Gp0057258 | Ga0003846 Sample Name Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF007 Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 10679763 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 2 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies Type Environmental Taxonomy Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Alternative Ecosystem Assignments
Environment Ontology (ENVO) forest biome → land → forest soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location Harvard Forest LTER, Petersham, MA, USA Coordinates Lat. (o ) 42.532967 Long. (o ) -72.209488 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F001359 Metagenome / Metatranscriptome 715 Y F007832 Metagenome / Metatranscriptome 344 Y F019167 Metagenome / Metatranscriptome 231 Y F091014 Metagenome / Metatranscriptome 108 Y
Sequences
Scaffold ID Protein ID Family Sequence
JGI20241J16302_100670 JGI20241J16302_1006702 F007832 VLFLADIFPGGGSPIADVFSIAIAIAMFALLYWLISLIDRI* JGI20241J16302_101226 JGI20241J16302_1012261 F019167 VTTVRIVLSHYNRPARAHDGSAVPDWRLHQRLVVLADTVPSEDGGHRAVPLWLQVYGNKELLGRLGRPVADAEGASGLLETAVRLLRTAGTEVSAVDIEPTSDDVPELRWDTVTAHVRLATAKGTRPF JGI20241J16302_101983 JGI20241J16302_1019831 F091014 MTGRRVGSFAEIERPGDYYGPVRGYTGDKEACFFLKPNARDEGVPPRSRSLQHVCFPPHTYRECPDGSLEIRNSIGSMISGDPATDDGWHGYLDEGHVWRQV* JGI20241J16302_102448 JGI20241J16302_1024481 F001359 AGFPAAADLLEHFLQGSGTEVDYRAGSQISQEARMSSAFLAVNDQVQQAVWRQLKAGGNRVQLPSGQLPTVAFESGNSDLYWAFRGTQGLTVTGRGSRVKGRYTGTLTYVIRDSYGFPASDTLGGFGPPMRYLQTACGAPQHRGGAHWFPDTITVTVPFSQPA*
