Sample 3300001788

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300001788

3300001788: BioPara_130528DK_S3

Overview

Basic Information
IMG/M Taxon OID	3300001788 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099430 \| Gp0056061 \| Ga0013022
Sample Name	BioPara_130528DK_S3
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	192504559
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Biogas Reactor Microbial Communities From The Max Planck Institute, Germany
Type	Engineered
Taxonomy	Engineered → Solid Waste → Grass → Composting → Bioreactor → Biogas Reactor → Biogas Reactor Microbial Communities From The Max Planck Institute, Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	na → na → na

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F021959	Metagenome / Metatranscriptome	216	Y
F062734	Metagenome / Metatranscriptome	130	N
F067884	Metagenome / Metatranscriptome	125	N
F085349	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
BP130528DKS3_1676739	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513	Open in IMG/M
BP130528DKS3_1686664	Not Available	571	Open in IMG/M
BP130528DKS3_1689492	Not Available	591	Open in IMG/M
BP130528DKS3_1706048	Not Available	787	Open in IMG/M
BP130528DKS3_1713568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	987	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
BP130528DKS3_1676739	BP130528DKS3_16767392	F067884	EWFSALARQAQKFVLYDEDQVSMLREITDTVRVYDISMEYVLGTVDRIPESRVEYACVGFSETDWVH*
BP130528DKS3_1686664	BP130528DKS3_16866641	F014003	METLFNKAKMKSWIKKARKSSSFGYGHGYITDGYILLIEEQHMQPVILELFGTLAPECRYTAEMFQKMMDLPNEVIEVIDSELEYAPKPKYRLRIFYDPKTGKELTIDGKYFDLLDTPRAHKFCTNDSMDRLWIKYYNDDVVGVIAPVVLQEQLSHIRFKAEEEREQV
BP130528DKS3_1689492	BP130528DKS3_16894921	F062734	GRQYTAVVMDNESVADATVIGEYYTYPMWVWMLFGVLVACLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRLQG*
BP130528DKS3_1706048	BP130528DKS3_17060482	F085349	MSMFKFLSTAEQLLEERRKNEALRSLVKDLEDAALELAEIVAANEEAIQEVQNG*
BP130528DKS3_1713568	BP130528DKS3_17135684	F021959	MEVEIVSEQDIARLQEQIKTLFSDVDELKTDIKEIKQQLTNRLPLWATMLISVLT

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